Weekly national charts, as the trade papers printed them
| Record | Peak | Weeks | Run |
|---|---|---|---|
| Sober | |||
| R&R AOR Tracks | 15 | 21 | 9/10/93 – 2/11/94 |
| Billboard Mainstream Rock | 13 | 23 | 10/9/93 – 3/12/94 |
| Prison Sex | |||
| R&R AOR Tracks | 26 | 13 | 1/21/94 – 4/15/94 |
| Billboard Mainstream Rock | 32 | 9 | 2/26/94 – 4/23/94 |
| Intolerance | |||
| R&R AOR Tracks | 58 | 2 | 6/3/94 – 6/10/94 |
| Stinkfist | |||
| Billboard Mainstream Rock | 17 | 26 | 9/28/96 – 3/22/97 |
| Billboard Modern Rock / Alternative | 19 | 19 | 10/5/96 – 2/8/97 |
| H. | |||
| Billboard Mainstream Rock | 23 | 18 | 2/22/97 – 6/28/97 |
| AEnema | |||
| Billboard Mainstream Rock | 25 | 22 | 8/2/97 – 3/7/98 |
| Forty Six & 2 | |||
| Billboard Mainstream Rock | 22 | 18 | 11/15/97 – 3/14/98 |
| Schism | |||
| Billboard Modern Rock / Alternative | 2 | 29 | 5/19/01 – 12/1/01 |
| Billboard Mainstream Rock | 2 | 33 | 5/19/01 – 12/29/01 |
| Billboard Hot 100 | 67 | 20 | 6/23/01 – 11/3/01 |
| Lateralus | |||
| Billboard Modern Rock / Alternative | 18 | 18 | 11/17/01 – 3/16/02 |
| Billboard Mainstream Rock | 14 | 22 | 11/17/01 – 4/13/02 |
| Parabola | |||
| Billboard Mainstream Rock | 10 | 26 | 4/20/02 – 10/12/02 |
| Billboard Modern Rock / Alternative | 31 | 7 | 4/27/02 – 6/8/02 |
| Vicarious | |||
| Billboard Modern Rock / Alternative | 2 | 20 | 5/6/06 – 9/16/06 |
| Billboard Mainstream Rock | 2 | 21 | 5/6/06 – 9/23/06 |
| The Pot | |||
| Billboard Modern Rock / Alternative | 5 | 30 | 7/22/06 – 2/10/07 |
| Billboard Mainstream Rock | 1 | 37 | 8/5/06 – 4/14/07 |
| Jambi | |||
| Billboard Mainstream Rock | 7 | 20 | 2/10/07 – 6/23/07 |
| Billboard Modern Rock / Alternative | 23 | 11 | 4/14/07 – 6/23/07 |
| Fear Inoculum | |||
| Billboard Mainstream Rock | 2 | 20 | 8/17/19 – 12/28/19 |
| Billboard Hot 100 | 93 | 1 | 8/17/19 – 8/17/19 |
| Billboard Modern Rock / Alternative | 30 | 14 | 8/24/19 – 12/7/19 |
| Pneuma | |||
| Billboard Mainstream Rock | 15 | 20 | 1/4/20 – 5/23/20 |