Weekly national charts, as the trade papers printed them
| Record | Peak | Weeks | Run |
|---|---|---|---|
| Girl's Not Grey | |||
| Billboard Modern Rock / Alternative | 7 | 23 | 2/15/03 – 7/19/03 |
| Billboard Mainstream Rock | 33 | 10 | 3/15/03 – 5/17/03 |
| The Leaving Song Pt. II | |||
| Billboard Modern Rock / Alternative | 16 | 18 | 7/5/03 – 11/1/03 |
| Billboard Mainstream Rock | 31 | 10 | 8/2/03 – 10/4/03 |
| Silver And Cold | |||
| Billboard Modern Rock / Alternative | 7 | 26 | 12/6/03 – 5/29/04 |
| Billboard Mainstream Rock | 39 | 2 | 1/17/04 – 1/24/04 |
| Miss Murder | |||
| Billboard Modern Rock / Alternative | 1 | 26 | 5/6/06 – 10/28/06 |
| Billboard Hot 100 | 24 | 20 | 5/13/06 – 9/30/06 |
| Billboard Mainstream Rock | 13 | 20 | 6/3/06 – 10/14/06 |
| R&R Pop CHR | 40 | 3 | 7/21/06 – 8/4/06 |
| Love Like Winter | |||
| Billboard Modern Rock / Alternative | 4 | 22 | 10/7/06 – 3/3/07 |
| Billboard Hot 100 | 68 | 5 | 12/30/06 – 1/27/07 |
| The Missing Frame | |||
| Billboard Modern Rock / Alternative | 17 | 11 | 3/17/07 – 5/26/07 |
| Medicate | |||
| Billboard Modern Rock / Alternative | 7 | 20 | 9/12/09 – 1/23/10 |
| Beautiful Thieves | |||
| Billboard Modern Rock / Alternative | 23 | 15 | 1/2/10 – 4/10/10 |
| 17 Crimes | |||
| Billboard Modern Rock / Alternative | 25 | 13 | 8/31/13 – 11/23/13 |
| Snow Cats | |||
| Billboard Modern Rock / Alternative | 39 | 3 | 1/7/17 – 1/21/17 |